GenePattern Notebook Technical Documentation
This is the technical documentation for GenePattern Notebook. For all the documentation go here
What is GenePattern Notebook?
The GenePattern Notebook environment integrates GenePattern's analysis platform with the Jupyter Notebook system, allowing researchers to create documents that interleave formatted text, graphics and other multimedia, executable code, and GenePattern analyses, creating a single "research narrative" that puts scientific discussion and analyses in the same place.
GenePattern and Jupyter Notebook
GenePattern provides hundreds of analytical tools for the analysis of gene expression (RNA-seq and microarray), sequence variation and copy number, proteomic, flow cytometry, and network analysis. These tools are all available through a Web interface with no programming experience required.
Jupyter Notebook is an electronic notebook environment that allows you to create and share documents that contain live code, equations, visualizations, and narrative text. If you are unfamiliar with the Jupyter Notebook environment, we recommend you take a look at the Jupyter Quickstart Guide